KEGGREST Seurat SeuratObject sp dplyr Matrix
If not installed already, we recommend to first install the latest version of Seurat and SeuratObject.
# we remove the last version to demonstrate installation
remove.packages("CellSpectra")## Removing package from '/Library/Frameworks/R.framework/Versions/4.2-arm64/Resources/library'
## (as 'lib' is unspecified)#time stamp
start.time <- Sys.time()
# download the .tar.gz file and change to the respective path
install.packages("/Users/konstantin/Documents/GitHub/CellSpectra_0.1.0.tar.gz", repos = NULL, type = "source")Check if we can load CellSpectra
end.time <- Sys.time()
execution_time <- end.time - start.time
print(execution_time)## Time difference of 10.75228 secssessionInfo()## R version 4.2.2 (2022-10-31)
## Platform: aarch64-apple-darwin20 (64-bit)
## Running under: macOS 15.1.1
##
## Matrix products: default
## BLAS: /Library/Frameworks/R.framework/Versions/4.2-arm64/Resources/lib/libRblas.0.dylib
## LAPACK: /Library/Frameworks/R.framework/Versions/4.2-arm64/Resources/lib/libRlapack.dylib
##
## locale:
## [1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8
##
## attached base packages:
## [1] stats graphics grDevices utils datasets methods base
##
## other attached packages:
## [1] CellSpectra_0.1.0
##
## loaded via a namespace (and not attached):
## [1] pillar_1.9.0 bslib_0.4.2 compiler_4.2.2
## [4] jquerylib_0.1.4 GenomeInfoDb_1.34.9 XVector_0.38.0
## [7] bitops_1.0-7 tools_4.2.2 zlibbioc_1.44.0
## [10] digest_0.6.31 lattice_0.20-45 tibble_3.2.1
## [13] lifecycle_1.0.4 jsonlite_1.8.4 evaluate_0.20
## [16] pkgconfig_2.0.3 png_0.1-8 rlang_1.1.4
## [19] Matrix_1.6-5 cli_3.6.3 rstudioapi_0.14
## [22] yaml_2.3.7 xfun_0.42 fastmap_1.1.1
## [25] GenomeInfoDbData_1.2.9 httr_1.4.5 dplyr_1.1.4
## [28] knitr_1.45 Biostrings_2.66.0 generics_0.1.3
## [31] S4Vectors_0.36.1 sass_0.4.5 vctrs_0.6.5
## [34] IRanges_2.32.0 grid_4.2.2 tidyselect_1.2.1
## [37] stats4_4.2.2 glue_1.8.0 R6_2.5.1
## [40] fansi_1.0.6 rmarkdown_2.20 purrr_1.0.2
## [43] tidyr_1.3.1 magrittr_2.0.3 htmltools_0.5.4
## [46] BiocGenerics_0.44.0 KEGGREST_1.38.0 utf8_1.2.4
## [49] RCurl_1.98-1.10 cachem_1.0.6 crayon_1.5.2